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Stefanie Czischek

Quantum Physics and AI
sczisch2"at"uottawa.ca

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Francesco Gentile

AI for Chemistry & Medicine
fgentile"at"uottawa.ca

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Augusto Gerolin

AI at Math & Chemistry
agerolin"at"uottawa.ca

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Arvind Mer

AI in Biochemistry, Microbiology, and Immunology
amer"at"uottawa.ca

Postdoctoral researchers and Graduate students 

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Adolfo Vargas-Jiménez

Postdoctoral Researcher
Mathematics

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Dmitry Evdokimov

PhD student
AI for Chemistry & Physics

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Nataliia Monina

PhD student
Math & Quantum Chemistry

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Vitalii Bielievtsov

MSc student  
DTI & AI

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Valeria Kolesnik

MSc student (with Prof. S. Schillo) 
Data Sciences

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Pavlo Pelikh

MSc student  
Optimal Transport & AI

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Fanch Coudreuse

PhD student (France)
Mathematics, ENS-Lyon (France)

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Eric Zizzi

PhD student (Italy)
Bioengineering, Politecnico di Torino

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Nikita Davydov

Undergraduate (Ukraine)  
Computer Sciences, Kharkiv

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Adeline Avenido

Volunteer student
Biopharmaceutical Science

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Haïda Diamouténé

Honours student
Biochemistry

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Jean Paul Kazzi

UROP student
Biotechnology

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Jacqueline Kuan

Honor student
Biopharmaceutical Science

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Aya Mikou

Volunteer student
Biology

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Daniel Calero

Undergraduate, MITACS (2022)
Physics, U. del Valle (Colombia)

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Ben Langton

Undergraduate, MITACS (2022)
Mathematics, Durham (UK)

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Akshay Raman

Undergraduate, MITACS (2022)
Computer Sciences, VIT (India)

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Liam Meades

Volunteer student (2022)
Quantum Chemistry

Brief Research Description





  • Optimal Transport and AI

    We develop tools to improve the understanding of density estimation and generation in GANs, VAEs, Flow and Diffusion-based Generative Models. We are also interested in fundamental theory and computational algorithms for multi-marginal optimal transport. Examples where our methodology is applied include Wasserstein Barycenters, Mean-Field games and Trajectory Inference in Biology.

     

  • Machine Learning for Chemistry

    The focus of our current research is to develop machine learning methods to accelerate molecular simulations. These surrogate models are of particular interest for the expansion of molecular discovery to larger chemical spaces of billions of chemicals.

    Another research line focus in extending the accuracy of electronic Density Functional Theory (DFT) to systems in which electronic correlation plays a prominent role. In particular using machine learning methods and the Stricly Correlated Electron (SCE) formalism to help in the construction of improved approximate functionals.

  • Machine Learning for Physics

    Our research focuses on the intersection of artificial neural networks and quantum technologies. We create computational and machine learning methods to enhance classical numerical simulations of quantum many-body systems and to optimize processes in experimental setups for quantum computation and quantum simulation.

    Furthermore, we develop a mathematical formalism and computational algorithms for Quantum Wasserstein distances, which is the quantum analog of the celebrated Wasserstein distances for density matrices/operators.

  • AI for Drug Discovery

    We are particularly interested in developing new machine learning and physics-based tools to improve ligand discovery, as well as aiding the design of drug candidates with novel mechanisms of action. The ultimate goal of our research is to contribute to the development of novel therapeutics. One of the main applications of our work is on the investigation of proteins that can be pharmacologically targeted to combat drug resistance in cancer.


Collaborators and Mentors


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Hilke Bahmann (Chemistry, Wuppertal)
Giuseppe Buttazzo (Mathematics, Pisa)
Artem Cherkasov (Chemistry, UBC)
Alberto Coccarelli (Engineering, Swansea)
Simone Di Marino (Math, Genoa)
Dario Feliciangeli (Math, IST-Austria)
Chris Finlay (AI, McGill & Deep Render)
Gero Friesecke (Math/Chemistry, TU Munich)
Klaas Giesbertz (Chemistry, Amsterdam)
Juri Grossi (Chemistry, UC Merced)
Paola Gori-Giorgi (Chemistry, Amsterdam)
Timothy J. Daas (Chemistry, Amsterdam)
Anna Kausamo (Math, Firenze)
Anton Mallasto (AI, SILO.AI)

Ha Quang Minh (AI, RIKEN-AIP)
Guido Montúfar (AI, UCLA & MPI)
Luca Nenna (Math, Paris-Orsay)
Mircea Petrache (Math, PUC Chile)
Aram Pooladian (AI, New York)
Lorenzo Portinale (Math, Bonn)
Jordane Preto (Biochemistry, Lyon)
Tapio Rajala (Math, Jyväskylä)
Michael Seidl (Physics, Regensburg)
Jack Tuszynski (Physics, Politecnico di Torino)
Robert van Leeuwen (Physics, Jyväskylä)
Bozhidar Velichkov (Math, Pisa)
Stefan Vuckovic (Chemistry, Lecce & Amsterdam)
Johannes Zimmer (Math, Bath).